AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RJG36T

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
GACAGTG HEPTAMER 7 nt AGGGGACGTCAGTGTGAGCCCGG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
GACAGTGAGGGGACGTCAGTGTGAGCCCGGACACAAACC

Find similar RSS

Alleles with this RSS variant

4 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV3-7FPK*01_i0ac_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_32--------t40_g42t_t45c_g46c_g47c_g49a_g50a_g51c_54ttctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_i137gggg_a138g_a142g_a143g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g289a_t296c_300------------ca313_a316t RHESUS IGH MUSA RHESUS-V3EWWW4KE
IGHV3-7FPK*01_i0c_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_32--------t40_g42t_t45c_g46c_g47c_g49a_g50a_g51c_54ttctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_i137gg_a138g_a142g_a143g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g289a_t296c_300------------ca313_a316t RHESUS IGH MUSA RHESUS-VLBIKZH3E
IGHV3-7FPK*01_i0caac_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_32--------t40_g42t_t45c_g46c_g47c_g49a_g50a_g51c_54ttctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_i137gg_a138g_a142g_a143g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g289a_t296c_300------------ca313_a316t RHESUS IGH MUSA RHESUS-VVMUYGXFG
IGHV3-N72G*01_6-----10_14atcg17_20tcttt24_g26a_a27t_c33a_t35a_g37t_t38a_c39t_a41c_g42c_t45a_g46a_c47a_g49t_g50c_g51t_c54t_56---ca60_t64-_t69c_c71t_a73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_i137ggg_a138g_a142g_a143g_a163g_c172a_a174t_g182c_g191a_c194g_a197g_g216c_c223t_c237-_a238-_a245g_c281t_g289a_a297g_300------------ca313_a316t RHESUS IGH MUSA RHESUS-V33UX77VL