RHESUS-VLBIKZH3E
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-7FPK*01_i0c_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_32--------t40_g42t_t45c_g46c_g47c_g49a_g50a_g51c_54ttctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_i137gg_a138g_a142g_a143g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g289a_t296c_300------------ca313_a316t: a Macaca mulatta IGH V allele sequence, 279 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 279 nt |
| Protein UID i | RHESUS-VP-3RRQN3 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VLBIKZH3E). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-7FPK*01_i0c_6tgga9_t11c_15tctt18_c20g_t21a_g22t_g25a_g26t_32--------t40_g42t_t45c_g46c_g47c_g49a_g50a_g51c_54ttctcc59_t64-_t69c_c71t_g73t_t76c_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_i137gg_a138g_a142g_a143g_a163g_i170taa_g172c_g173c_g176c_c177t_a184g_c194g_a197g_g216c_c223t_c237-_a238-_a245g_g289a_t296c_300------------ca313_a316t | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | GACAGTGAGGGGACGTCAGTGTGAGCCCGGACACAAACC | MUSA | RHESUS-RJG36T |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGACAGCCTCTGGGCTGCACATGAGGAGGGCTCCCTCCCCACGTTCCATGGGAACGTCAA | 46 + 17 nt | MUSA | RHESUS-LWFZFZ |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VLBIKZH3E/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases