AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RKGGNM

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
AGCAATG HEPTAMER 7 nt AGGGGACTTCGTTGTGAGCCTAG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
AGCAATGAGGGGACTTCGTTGTGAGCCTAGACACAAACC

Find similar RSS

Alleles with this RSS variant

7 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV11-3ZCZ*01_i0caacaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_40gcat43_t45c_g48a_g49c_g57c_g70a_g79a_t81a_g82t_g83t_t85c_i90ata_g92c_a106g_g107t_a109t_a110c_t112g_g114c_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_162gttc165_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_t256c_g259a_t262-_c263-_c265t_g267a_a268c_c278t_280tgtctactt288_c290a_g291a_g292t_297aagta301_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a RHESUS IGH MUSA RHESUS-V7FM2WT7J
IGHV11-3ZCZ*01_i0caacaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_a41c_c43t_t45c_g48a_g49c_g57c_g70a_t81a_g82t_g83t_t85c_c86a_i90ata_g92c_a106g_g107t_a109t_a110c_g114c_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_162gttc165_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_c203a_c205t_c206t_226------------237_a240t_g242t_a243c_g247a_t256c_g259a_t262-_c263-_c265t_g267a_a268c_c278t_280tgtctactt288_c290a_g291a_g292t_297aagta301_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a RHESUS IGH MUSA RHESUS-VORZVSXEM
IGHV11-3ZCZ*01_i0caacaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_a41c_g42a_c43t_t45c_g48a_g49c_g57c_g70a_g79a_t81a_g82t_g83t_t85c_i90ata_g92c_a106g_g107t_a109t_a110c_t112g_g114c_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_162gttc165_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_t256c_g259a_t262-_c263-_c265t_g267a_a268c_c278t_280tgtctactt288_c290a_g291a_g292t_297aagta301_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a RHESUS IGH MUSA RHESUS-VMSHV3AGU
IGHV11-3ZCZ*01_i0caacaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_a41c_g42a_c43t_t45c_g48a_g49c_g57c_g70a_t81a_g82t_g83t_t85c_c86a_i90ata_g92c_a106g_g107t_109tctg112_g114c_g116a_g119a_c120t_g123t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_162gttc165_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_c249g_t256c_g259a_t262-_c263-_c265t_g267a_a268c_c278-_g280t_a283t_c285t_g286a_c288t_c290a_g291a_g292t_297aagtac302_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a RHESUS IGH MUSA RHESUS-V4B6ZIANP
IGHV11-3ZCZ*01_i0caacaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_a41c_g42a_c43t_t45c_g48a_g49c_g57c_g70a_t81a_g82t_g83t_t85c_c86a_i90ata_g92c_a106g_g107t_a109t_a110c_t112g_g114c_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_162gttc165_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_c249g_t256c_g259a_t262-_c263-_c265t_g267a_a268c_c278-_g280t_a283t_c285t_g286a_c288t_c290a_g291a_g292t_297aagtac302_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a_g319t RHESUS IGH MUSA RHESUS-V4XDBM5ZX
IGHV11-3ZCZ*01_i0caacaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_a41c_g42a_c43t_t45c_g48a_g49c_g57c_g70a_t81a_g82t_g83t_t85c_i90ata_g92c_a106g_g107t_a109t_a110c_t112g_g114c_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_162gttc165_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_226------------237_a240t_g242t_a243c_g247a_c249g_t256c_g259a_t262-_c263-_c265t_g267a_a268c_c278-_g280t_a283t_c285t_g286a_c288t_c290a_g291a_g292t_297aagtac302_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a RHESUS IGH MUSA RHESUS-VFQYUEMZV
IGHV4-KG56*01_i0acaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_40gcat43_t45c_g48a_g49c_g57c_g70a_g79a_t81a_a83t_t85c_i89cataac_c105t_g107t_a110c_t112g_a113g_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_a164t_c168g_a169g_c170g_a173g_a175g_g176a_t177a_c195a_g197a_c198t_207actt210_223-------229_t234a_237------242_g246a_g258a_c263-_c264-_c265-_g267a_a268c_c278t_280tgtctactt288_c290a_g291a_g292t_297aagta301_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a RHESUS IGH MUSA RHESUS-VM4DUVVFI