RHESUS-VM4DUVVFI
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-KG56*01_i0acaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_40gcat43_t45c_g48a_g49c_g57c_g70a_g79a_t81a_a83t_t85c_i89cataac_c105t_g107t_a110c_t112g_a113g_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_a164t_c168g_a169g_c170g_a173g_a175g_g176a_t177a_c195a_g197a_c198t_207actt210_223-------229_t234a_237------242_g246a_g258a_c263-_c264-_c265-_g267a_a268c_c278t_280tgtctactt288_c290a_g291a_g292t_297aagta301_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a: a Macaca mulatta IGH V allele sequence, 277 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 277 nt |
| Protein UID i | RHESUS-VP-FTQQIF (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VM4DUVVFI). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-KG56*01_i0acaac_c1t_a2g_g3t_6ttct9_t11a_15cact18_g21t_24----27_g31-_g32-_a33-_g36t_t38a_40gcat43_t45c_g48a_g49c_g57c_g70a_g79a_t81a_a83t_t85c_i89cataac_c105t_g107t_a110c_t112g_a113g_g116a_g119a_c120t_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_a164t_c168g_a169g_c170g_a173g_a175g_g176a_t177a_c195a_g197a_c198t_207actt210_223-------229_t234a_237------242_g246a_g258a_c263-_c264-_c265-_g267a_a268c_c278t_280tgtctactt288_c290a_g291a_g292t_297aagta301_t304c_a308t_c309t_g311a_t312a_c314g_g315a_g317a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AGCAATGAGGGGACTTCGTTGTGAGCCTAGACACAAACC | MUSA | RHESUS-RKGGNM |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGTATTGCCCTTCTCATAAGAAATTGTTCGATCTAAACCGAAACAGAACCCGTTAACATCA | 46 + 17 nt | MUSA | RHESUS-L6GRTY |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VM4DUVVFI/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases