AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RXK47F

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
TGCAGCG HEPTAMER 7 nt TTCACCCAGGACACTGACAGGAG spacer · 23 nt ACGGGAACA NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
TGCAGCGTTCACCCAGGACACTGACAGGAGACGGGAACA

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Alleles with this RSS variant

2 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGLV4-HI2D*01_i0aggctggaccccatagtttt_7cccag11_a13t_c14g_t19-_c20-_c22t_c23g_29-----agg36_c39a_t41c_g42c_g43a_c47g_c48a_c50g_g52-_t53-_c54-_64ctgg67_c69t_a70t_t72c_g75-_a76-_g77-_79ttctt83_c85a_a86c_t90c_c108g_t109g_111-------117_121gcag124_t126g_a128t_a134c_g135a_c136g_g140a_143gtctgggg150_g152t_t154c_a155c_t157a_t158g_t161g_t163a_g165c_t168a_a170g_174gagg177_g187c_g188c_c189a_g191c_a194t_c195g_197aggctcaa204_t207g_g209a_a211t_t212c_c214a_c215a_t216g_g224a_t225g_t227c_g233t_c234a_c236g_c237g_g239a_c240g_t247c_g250-_g251-_g252a_c254t_t255a_g256a_c259t_t262a_a263t_c267a_a268t_a271-_t272-_274cttg277_c279g_c282g_287---------295_g297a_g298c_t300c_g301c_t304c_a305c_t307g_c309g_t312c_c313t_316---------------330_c334t RHESUS IGL MUSA RHESUS-VHGYHBCVB
IGLV4-HI2D*01_i0aggctggaccccatagtttt_7cccag11_a13t_c14g_t19-_c20-_c22t_c23g_29-----agg36_c39a_t41c_g42c_g43a_c47g_c48a_c50g_g52-_t53-_c54-_64ctgg67_c69t_a70t_t72c_g75-_a76-_g77-_79ttctt83_c85a_a86c_t90c_c108g_t109g_111-------117_121gcag124_t126g_a128t_a134c_g135a_c136g_g140a_143gtctgtgg150_g152t_t154c_a155c_t157a_t158g_t161g_t163a_g165c_t168a_a170g_174gagg177_g187c_g188c_c189a_g191c_a194t_c195g_197aggctcaa204_t207g_g209a_a211t_t212c_c214a_c215a_t216g_g224a_t225g_t227c_g233t_c234a_c236g_c237g_g239a_c240g_t247c_g250-_g251-_g252a_c254t_t255a_g256a_c259t_t262a_a263t_c267a_a268t_a271-_t272-_274cttg277_c279g_c282g_287---------295_g297a_g298c_t300c_g301c_t304c_a305c_t307g_c309g_t312c_c313t_316---------------330_c334t RHESUS IGL MUSA RHESUS-VO44MLL2K