MOUSE-DE772DGJJ
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
a Mus musculus IGH D allele sequence, 27 nt, not recorded, archived. The nucleotide sequence is below, with every recorded name and its source.
A newer source record exists for this allele designation. IGHD6-2*01 is still published by IMGT as MOUSE-DVA65AYDQ, 29 nt, which contains this sequence. This is the earlier record (27 nt, current in IMGT releases 2013-01-20–2019-03-01). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.
| Species | Mus musculus (NCBITAXON:10090) |
|---|---|
| Locus / type | IGH / D |
| Functional i | None |
| Length | 27 nt |
Coding sequence (nt)
Name history i: first seen IMGT 2013-01-20; formerly IGHD6-2*01 (to 2013-01-20); formerly IGHD6-2*02 (to 2016-12-19); superseded by IGHD6-2*01 (29 nt); archived — removed from the current IMGT reference, kept reachable;
Allele names i
None.
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHD6-2*01 | 2013-01-20 |
| IGHD6-2*02 | 2016-12-19 |
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 27 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/MOUSE-DE772DGJJ/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases