MOUSE-DPZJCQL37
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHD6-1*01, IGHD6-12*01, IGHD6-2-1*01, IGHD6-3*01, IGHD6-7*01, IGHD6-8*01 and 1 more names: a Mus musculus IGH D allele sequence, 29 nt, functional. The nucleotide sequence is below, with every recorded name and its source.
| Species | Mus musculus (NCBITAXON:10090) |
|---|---|
| Locus / type | IGH / D |
| Functional i | True |
| Length | 29 nt |
Coding sequence (nt)
Name history i: formerly IGHD5-7*01 (to 2015-03-19); formerly IGHD6-1*02 (to 2015-03-19);
Allele names i
Every name below denotes this exact sequence (MOUSE-DPZJCQL37). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 7 different allele designations: IGHD6-1*01, IGHD6-12*01, IGHD6-2-1*01, IGHD6-3*01, IGHD6-7*01, IGHD6-8*01, IGHD6-9*01. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD6-1*01 | IMGT | IMGT |
| IGHD6-12*01 | IMGT | IMGT |
| IGHD6-2-1*01 | IMGT | IMGT |
| IGHD6-3*01 | IMGT | IMGT |
| IGHD6-7*01 | IMGT | IMGT |
| IGHD6-8*01 | IMGT | IMGT |
| IGHD6-9*01 | IMGT | IMGT |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHD5-7*01 | 2015-03-19 |
| IGHD6-1*02 | 2015-03-19 |
External records i
GenBank: GENBANK:AC073553 GenBank: GENBANK:BK063712 GenBank: GENBANK:BK063713 GenBank: GENBANK:BK063714 IMGT: IGHD6-1*01
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | CACAATGTCTTGTGACCTTACAAGAAAG | IMGT | MOUSE-RI66IU |
| d_rs_3 | CACAATGTGTTGTGACCTTACAAGAAAG | IMGT | MOUSE-RKTHWU |
| d_rs_3 | CACAATGTCTTGTGTCCTTACAAGAAAG | IMGT | MOUSE-RPURGK |
| d_rs_3 | CACAATGACTTGTGACCTTACAAGAAAG | IMGT | MOUSE-RR2ZAE |
| d_rs_5 | CCTCTATAACAGTACCCATGGTGAATTC | IMGT | MOUSE-R4QXS2 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 29 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/MOUSE-DPZJCQL37/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases