ORANGSUM-VUDOJXWHZ

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesPongo abelii LocusIGH TypeV FunctionalTrue Length296 nt

IGHV1-116*01, IGHV1-119*01: a Pongo abelii IGH V allele sequence, 296 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

Species	Pongo abelii (NCBITAXON:9601)
Locus / type	IGH / V
Functional i	True
Length	296 nt
Protein UID i	ORANGSUM-VP-SFLVGQ (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

296 nt

CAGGTCCAGCTGGTGCAGTCGGGGGCTGAGGTGAAGAAGCCTGGGTCCTCAGTGAAGATCTCCTGCAAGGTTTCTGAAGACACCTTCAGCAGCTATGCTATCAGCTGGGTGCAACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTGTGCTTGGTACAGCAGACTATGCACAGAAGTTCCAGGGCAGAGTCACGATTACTGCGGACACATCCACGAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCAACAGA

Amino-acid sequence (V-REGION)

98 aa

QVQLVQSGAEVKKPGSSVKISCKVSEDTFSSYAISWVQQAPGQGLEWMGGIIPVLGTADYAQKFQGRVTITADTSTSTAYMELSSLRSEDTAVYYCAT

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (ORANGSUM-VUDOJXWHZ). None is canonical; they are labels, and the UID is the key.

Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV1-116*01, IGHV1-119*01. These are identical normalized nucleotide sequences with different attributed names.

Name	Scheme	Source(s)
IGHV1-116*01	IMGT	IMGT
IGHV1-119*01	IMGT	IMGT

External records i

IMGT: IGHV1-116*01

Literature references 1 total · 1 sequence-in-paper i

PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.

PMID	Title	Evidence	Source
40205052	Complete sequencing of ape genomes.	sequence in paper	literature_supp

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	CACAGTGTGAAAACCCACATCCTGAGAGTGTCAGAAACC	IMGT	ORANGSUM-RNTBEN

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACGGGTGTCCAGTCC	46 + 11 nt	IMGT	ORANGSUM-LU24S3
ATGGACTGGACCTGGAGTTCCTCTTTGTTGTGGCAGCAGCTACGGGTGTCCAGTCC	45 + 11 nt	IMGT	ORANGSUM-LVBICV

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/ORANGSUM-VUDOJXWHZ/similar?min_identity=0.95&kind=nt.

API: JSON · AIRR AlleleDescription · aliases