ORANGSUM-VUDOJXWHZ
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
| Species | Pongo abelii (NCBITAXON:9601) |
|---|---|
| Locus / type | IGH / V |
| Functional i | True |
| Length | 296 nt |
| Protein UID i | ORANGSUM-VP-SFLVGQ (shared by alleles with the same V-REGION amino-acid sequence) |
Allele names i
Every name below denotes this exact sequence (ORANGSUM-VUDOJXWHZ). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV1-116*01, IGHV1-119*01. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV1-116*01 | IMGT | IMGT |
| IGHV1-119*01 | IMGT | IMGT |
External records i
IMGT: IGHV1-116*01
Literature references i
PubMed publications linked to this allele. A sequence-in-paper match indicates that this allele's exact sequence was detected in the publication text or supplementary material; it is sequence-level evidence.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 40205052 | Complete sequencing of ape genomes. | sequence in paper | literature_supp |
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGTGAAAACCCACATCCTGAGAGTGTCAGAAACC | IMGT | ORANGSUM-RNTBEN |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGACTGGACCTGGAGGTTCCTCTTTGTGGTGGCAGCAGCTACGGGTGTCCAGTCC | 46 + 11 nt | IMGT | ORANGSUM-LU24S3 |
| ATGGACTGGACCTGGAGTTCCTCTTTGTTGTGGCAGCAGCTACGGGTGTCCAGTCC | 45 + 11 nt | IMGT | ORANGSUM-LVBICV |
Find similar alleles
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/ORANGSUM-VUDOJXWHZ/similar?min_identity=0.95&kind=nt.
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
API: JSON · AIRR AlleleDescription · aliases