AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS ORANGSUM-RNTBEN

SpeciesORANGSUM
TypeV-RS · complete signal, 3' of V (39 nt)
Sources IMGT
CACAGTG HEPTAMER 7 nt TGAAAACCCACATCCTGAGAGTG spacer · 23 nt TCAGAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
CACAGTGTGAAAACCCACATCCTGAGAGTGTCAGAAACC

Find similar RSS

Alleles with this RSS variant

10 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV1-98*02 ORANGSUM IGH IMGT ORANGSUM-VPNIIIKXF
IGHV1-6*02 ORANGSUM IGH IMGT ORANGSUM-VL6POUEDA
IGHV1-6*01 ORANGSUM IGH IMGT ORANGSUM-VMIUI3TON
IGHV1-54*03 ORANGSUM IGH IMGT ORANGSUM-VW35J4HUC
IGHV1-54*02 ORANGSUM IGH IMGT ORANGSUM-VVVJN2YPX
IGHV1-54*01 ORANGSUM IGH IMGT ORANGSUM-VO6AP75C4
IGHV1-44*01 ORANGSUM IGH IMGT ORANGSUM-VIPNRBOCI
IGHV1-4*02 ORANGSUM IGH IMGT ORANGSUM-VN2J5EPUR
IGHV1-4*01 ORANGSUM IGH IMGT ORANGSUM-VIZHPKDUU
IGHV1-116*01 ORANGSUM IGH IMGT ORANGSUM-VUDOJXWHZ