AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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PIG-V5DRIBTG7

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesSus scrofa LocusIGK TypeV FunctionalNone Length299 nt

IGKV2-5*01: a Sus scrofa IGK V allele sequence, 299 nt, not recorded. The nucleotide and amino-acid sequence is below, with every recorded name and its source.

SpeciesSus scrofa (NCBITAXON:9823)
Locus / typeIGK / V
Functional iNone
Length299 nt
Protein UID iPIG-VP-OXJEWC (shared by alleles with the same V-REGION amino-acid sequence)

Coding sequence (nt)

299 nt
GCCATGGTGTTGACCCAGAGTGCAATCTTCCTTTCAGTTCAGCCGGGAGCGCCGGCCTCCATTTCCTGCAGGTCCAGTTAGAGCCTTGAGAGTTATAGTTACAATTTCTTGAGTTGGTACCAGCAGAAACCAGGCCAGTCGCCAAGGCTCCTGATTTATTTTGCTACAAACAAGGCCTCTGGTGTCCCAGACAGGTTCAGTGGCAGTGGGTCAGGCACAGATTTCACCTTGAAGATCAGCAGGGTGGAGGCTGAGGATGCAGGCGTTTATTACTGCCAGCAAAATAAAGAATCTCTTCC

Amino-acid sequence (V-REGION)

99 aa
AMVLTQSAIFLSVQPGAPASISCRSS*SLESYSYNFLSWYQQKPGQSPRLLIYFATNKASGVPDRFSGSGSGTDFTLKISRVEAEDAGVYYCQQNKESL

Published by the source, and consistent with the nucleotide sequence above. i

Name history i: stable — no former names, re-cuts, or archival on record.

Allele names i

Every name below denotes this exact sequence (PIG-V5DRIBTG7). None is canonical; they are labels, and the UID is the key.

NameSchemeSource(s)
IGKV2-5*01 IMGT IMGT

External records i

IMGT: IGKV2-5*01

Contributed by IMGT. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

PartSequenceSourceRSS UID
v_rsCACAGTGATACAGCCCTTGACACAAACC IMGT PIG-RNYFN6

Find similar (nt · aa · cross-species) i

Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/PIG-V5DRIBTG7/similar?min_identity=0.95&kind=nt.