RHESUS-DE5JFVNXR
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHD1-20*01, IGHD1-7*01, IGHD1-19*02: a Macaca mulatta IGH D allele sequence, 17 nt, functional. The nucleotide sequence is below, with every recorded name and its source.
Earlier records of this allele i
IMGT has published this allele name over more than one sequence extent. Earlier sequence extents are deferred from default search results but remain resolvable, so a paper that cited one still leads here.
| Record | Name | Length | Relation to this record | IMGT releases |
|---|---|---|---|---|
| RHESUS-DKP2I3W4X | IGHD1-7*01 | 18 nt | bases differ | 2013-01-20–2020-01-31 |
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / D |
| Functional i | True |
| Length | 17 nt |
Coding sequence (nt)
Name history i: re-cut from IGHD1-7*01 (18 nt);
Allele names i
Every name below denotes this exact sequence (RHESUS-DE5JFVNXR). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHD1-20*01, IGHD1-7*01, IGHD1-19*02. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD1-2J4B*04 | IgLabel | OGRDB |
| IGHD1-GRMY*02 | IgLabel | MUSA |
| IGHD1-20*01 | IMGT | IMGT |
| IGHD1-7*01 | IMGT | IMGT |
| IGHD1-19*02 | RhGLDB+ | RhGLDB+ |
External records i
genbank:MF989496.1: GENBANK:MF989496.1 GenBank: GENBANK:BK063715 IMGT: IGHD1-20*01 OGRDB: IGHD1-2J4B*04
Literature references i
PubMed publications linked to this allele.
| PMID | Title | Evidence | Source |
|---|---|---|---|
| 29163486 | verified | MUSA |
Contributed by IMGT, MUSA, OGRDB, RhGLDB+. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | CACTGTGAGAAAAGCCGCGTCCAAAACT | IMGT MUSA | RHESUS-R5XJVK |
| d_rs_3 | CACTGTGAGAAAAGCTGTGTCCAAAACT | MUSA | RHESUS-RIGFJX |
| d_rs_3 | CACTGTGAGAAAAGCTGCGTCCAAAACT | IMGT MUSA | RHESUS-RJTJDD |
| d_rs_5 | GGATTCTGAACAGCCCCGAGTCACGGTG | MUSA | RHESUS-RMMUYY |
| d_rs_5 | GGATTCTGAACAGCCCCGAGTCACAGTG | IMGT MUSA | RHESUS-RYPIRW |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 17 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/RHESUS-DE5JFVNXR/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases