RHESUS-DHAKAK2PC
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHD9-GADR*01_i0tccctgaactttcattt_a3c_a4c_g6c_c8g_a10t_a12g_g16c_g20c_t21a_a23c_c24t_g27c_t28a: a Macaca mulatta IGH D allele sequence, 45 nt, non-functional. The nucleotide sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / D |
| Functional i | False |
| Length | 45 nt |
Coding sequence (nt)
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-DHAKAK2PC). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHD9-GADR*01_i0tccctgaactttcattt_a3c_a4c_g6c_c8g_a10t_a12g_g16c_g20c_t21a_a23c_c24t_g27c_t28a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| d_rs_3 | ACATGTGGGCTCTTCTGTCAGACAAACA | MUSA | RHESUS-RFO6OL |
| d_rs_5 | AGTTTTCCCTGAGTTCAGGCATGCACTG | MUSA | RHESUS-R65FP7 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Restricted for D genes: only 45 nt alleles are compared, position by position. D genes are too short (8–148 nt, median 19 nt) for edit-distance scores to be interpreted reliably; the metric can open gaps that inflate identity, and at 19 nt the 0.75 identity floor is about four mismatches. A D allele is therefore compared only against D alleles of exactly the same length, scored position by position. Alleles of the same gene that differ in length are not ranked here; separating those requires a multiple-sequence alignment, not a pairwise score.
Ranks D alleles of the same length,
by positional identity.
Also available at /api/sequences/RHESUS-DHAKAK2PC/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases