RHESUS-V54YW5IDS

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalFalse Length280 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	False
Length	280 nt
Protein UID i	RHESUS-VP-LTKD5T (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-V54YW5IDS). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1-F5R3*01_c1t_c6g_c21t_c69t_g79a_t105c_c110a_g112a_c113t_g120c_c127t_g133a_c134a_c137t_g156a_t158g_a159g_g163t_165--------172_g175a_c177t_t186-_g187-_g188-_a190t_a191c_c192g_c194g_a196g_198tgttt202_c205t_g207t_g210c_t211a_c213t_c214t_g216t_g220t_g221c_c223g_g224t_g226a_t227g_c230-_c231-_t233a_a235t_c236t_243ttgtaga249_c251t_g254-_c255-_257tcaaa261_a263t_c264a_t266g_g267a_g268a_g270t_i274t_g275a_279aacttcc285_c288t_g291a_g292t_a293c_g297-_g298-_c300t_g301t_306aaca309_311caattt316_a318c	VDJbase	MUSA

Contributed by MUSA. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	ATCAATGTTGTAAATATTTTGGAACCCAAACACAAGTT	MUSA	RHESUS-RSM7C7

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACCGGACCTGGAGGATCCTCTTCTTGGTGGCTGCAGCTACAGGTGTGCCCACTCC	48 + 11 nt	MUSA	RHESUS-LQQA3E

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-V54YW5IDS/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

280 nt

TAGGTGCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCAGTGAAGGTCTCCTGTAAGGCTTCTAGATACACCTTTACCAGCTATATTATGCACTGGGTGTGACAGAACCTTGGACGAGGGCTTGAGTGAAGGGGATTTTAGTAATTCGAGAGATGTTTCATATAACATTTATTCTGTAAGCAAATTTCAGGGATTGTAGAATGAATCAAATTAAGAAATCTGATACAGAACTTCCTCTGAATCCATCTTTGTAAACATCAATTTCCGA

Amino-acid sequence (V-REGION)

93 aa

*VQLVQSGAEVKKPGSSVKVSCKASRYTFTSYIMHWV*QNLGRGLE*RGF**FERCFI*HLFCKQISGIVE*IKLRNLIQNFL*IHLCKHQFP

Translated here from the nucleotide sequence; no source published a protein for this allele. i

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