RHESUS-V5WDFWDVT
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-6HY2*02_g3c_g4a_g22t_g23t_g31a_g37t_a39g_c40t_g50c_g51a_c55g_c63t_t67c_g68t_c90t_a103t_c108g_t118a_a119g_g128a_g144a_g155a_c163t_g164t_a166t_t168g_g175a_a176g_g186a_a187g_t189c_c201t_a204g_c210t_c222t_g224c_g243t_a244g_c246t_c255a_g267a_a271g_t279c_t280c_c294t_c296g_a297t_g301a_307--------------320: a Macaca mulatta IGH V allele sequence, 282 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 282 nt |
| Protein UID i | RHESUS-VP-EZKXKS (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-V5WDFWDVT). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-6HY2*02_g3c_g4a_g22t_g23t_g31a_g37t_a39g_c40t_g50c_g51a_c55g_c63t_t67c_g68t_c90t_a103t_c108g_t118a_a119g_g128a_g144a_g155a_c163t_g164t_a166t_t168g_g175a_a176g_g186a_a187g_t189c_c201t_a204g_c210t_c222t_g224c_g243t_a244g_c246t_c255a_g267a_a271g_t279c_t280c_c294t_c296g_a297t_g301a_307--------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | TACTGTGGTGGCACTGTGTGTATCTCTGACTTCAGGGACA | MUSA | RHESUS-RAYSZE |
| v_rs | TACTGTGGTGGCACTGTGTGCATCTCTGACTTCAGGGACA | MUSA | RHESUS-RFK43G |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGAGTTTGGTCTCAGCTGGGTTTTCCTTATTGCTACTTTAAAGAGTGTCCAGTGT | 46 + 11 nt | MUSA | RHESUS-LUYS24 |
| ATGGAGTTTGGTCTCAGCTGGGTTTTCCTTATTGCTACTTTAAAAGGTGTCCAGTGT | 46 + 11 nt | MUSA | RHESUS-LZDOEL |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-V5WDFWDVT/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases