RHESUS-VAR4UEK6Y
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-5TXH*02_i0aa_g3a_g4c_c7t_a8t_g9t_12----c16_20gcactgtt27_a33c_c43a_t45c_i46ca_g48a_g49a_c53g_t56a_g57c_c69t_78caaa81_a83t_i90aca_g101c_g107a_a110c_a113g_g117c_c120t_c127t_c133t_g150t_t159c_g160a_a164g_c165g_t167-_c170g_t171g_a173c_t174g_a184t_t186a_c195a_g197a_c198t_a200c_g207a_t208c_c209t_c211t_a215g_g224c_t234c_a237c_g241c_a242c_c245t_i249a_g252a_c255a_t259g_c261t_c264t_c265t_g267t_i268c_c271t_t272g_g273a_c278g_t279c_g280c_c284g_g286a_c287a_c288g_c290a_g292t_g297a_g298a_g301a_t304g_t306g_a308t_c309t_g311a_t312g_g313a_g315a_g317a: a Macaca mulatta IGH V allele sequence, 300 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 300 nt |
| Protein UID i | RHESUS-VP-7OCZR5 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VAR4UEK6Y). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-5TXH*02_i0aa_g3a_g4c_c7t_a8t_g9t_12----c16_20gcactgtt27_a33c_c43a_t45c_i46ca_g48a_g49a_c53g_t56a_g57c_c69t_78caaa81_a83t_i90aca_g101c_g107a_a110c_a113g_g117c_c120t_c127t_c133t_g150t_t159c_g160a_a164g_c165g_t167-_c170g_t171g_a173c_t174g_a184t_t186a_c195a_g197a_c198t_a200c_g207a_t208c_c209t_c211t_a215g_g224c_t234c_a237c_g241c_a242c_c245t_i249a_g252a_c255a_t259g_c261t_c264t_c265t_g267t_i268c_c271t_t272g_g273a_c278g_t279c_g280c_c284g_g286a_c287a_c288g_c290a_g292t_g297a_g298a_g301a_t304g_t306g_a308t_c309t_g311a_t312g_g313a_g315a_g317a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CAAAGTGCGGGAAAGTCATTGTGAGTCCAGACACAAAGC | MUSA | RHESUS-RCLU37 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTTTCTCCTTGTGGGGTGACCTCCCCTGCCAGTGATTGCCACTCTAGAATCCATGCATGCC | 46 + 17 nt | MUSA | RHESUS-LBN3VS |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VAR4UEK6Y/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases