RHESUS-VCSD2XIEO
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-PJYR*01_c1g_g13a_g15t_21caca24_g26a_a27g_g32a_g34c_g37a_t38g_c39a_g42a_g50a_c53t_c71t_t78c_g79a_a85g_t89g_a110t_t111c_g112t_c114a_c118a_a119g_g123a_c126t_g128a_g133t_c141g_g155a_g156a_g159a_g160a_c161t_t164g_t169a_c170a_a190c_t192c_a194t_t196c_t199c_c210t_g211c_c223a_g239a_t247g_c249t_a256t_c279t_t281a_296t------------------------320: a Macaca mulatta IGH V allele sequence, 272 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 272 nt |
| Protein UID i | RHESUS-VP-ZIAIMB (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VCSD2XIEO). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-PJYR*01_c1g_g13a_g15t_21caca24_g26a_a27g_g32a_g34c_g37a_t38g_c39a_g42a_g50a_c53t_c71t_t78c_g79a_a85g_t89g_a110t_t111c_g112t_c114a_c118a_a119g_g123a_c126t_g128a_g133t_c141g_g155a_g156a_g159a_g160a_c161t_t164g_t169a_c170a_a190c_t192c_a194t_t196c_t199c_c210t_g211c_c223a_g239a_t247g_c249t_a256t_c279t_t281a_296t------------------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CGCCATGTAAGGCTGTACATAGGGTTTGAAGTGAGGAAAC | MUSA | RHESUS-RZRMY7 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAAAACAGGGCCAACCCTCTTCTGGTGAGAACAAGCCCAGACCTGGGTTCAGTGT | 46 + 11 nt | MUSA | RHESUS-L3AB7O |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VCSD2XIEO/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases