RHESUS-VIPOPFDSS
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-176*01, IGHV3-3NC3*06_i45ggg: a Macaca mulatta IGH V allele sequence, 299 nt, functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | True |
| Length | 299 nt |
| Protein UID i | RHESUS-VP-JYJVAB (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Published by the source, and consistent with the nucleotide sequence above. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VIPOPFDSS). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 2 different allele designations: IGHV3-176*01, IGHV3-3NC3*06_i45ggg. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV10-4V64*01 | IgLabel | OGRDB |
| IGHV3-176*01 | IMGT | IMGT |
| IGHV3-3NC3*06_i45ggg | VDJbase | MUSA |
Other names & identifiers
Alternative and former names, e.g. IMGT clone names, plus accession identifiers.
| Name | Kind | Source(s) |
|---|---|---|
| BK063715.1 | NCBI accession | ncbi_nucleotide |
External records i
NCBI nucleotide: link GenBank: GENBANK:BK063715 GenBank: GENBANK:BK063715.1 IMGT: IGHV3-176*01 OGRDB: IGHV10-4V64*01
Literature references i
PubMed publications linked to this allele.
Contributed by IMGT, MUSA, OGRDB, ncbi_nucleotide. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAATGAGGGGAGGTCAGTGTGAGCCCAGACACAAACC | IMGT MUSA | RHESUS-RJFN2T |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGAGTTCGGGCCGAGCTGGGTTTTCCTTGTTGCTCTTTTAAAAGGTGTCCAGTGT | 46 + 11 nt | IMGT | RHESUS-LOHSJN |
| ATGAAGTTCGGGCCGAGCTGGGTTTTCCTTGTTGCTATTTTCAAAGGTGTGTCCAGTGT | 48 + 11 nt | MUSA | RHESUS-LXKYOI |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VIPOPFDSS/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases