RHESUS-VKXCKG2AP
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-5TXH*02_3acaa6_8tatgtttctcag19_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_c47t_g49c_g57c_g70a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_t108c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a_g319a_321aa322: a Macaca mulatta IGH V allele sequence, 282 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 282 nt |
| Protein UID i | RHESUS-VP-AHNIPV (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VKXCKG2AP). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-5TXH*02_3acaa6_8tatgtttctcag19_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_c47t_g49c_g57c_g70a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_t108c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a_g319a_321aa322 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AACAATGAGGGGACTTCATTGTGAGCATAGACACAAACC | MUSA | RHESUS-RRQSNX |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGTATTGCCCTTCTCATGAGAAATTGCTCGATCTAAACCAAAACCCAGAACCTGTTAACAT | 46 + 17 nt | MUSA | RHESUS-LG6RVX |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VKXCKG2AP/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases