AIRBabel immunoglobulin and T-cell receptor allele sequences · leaders · RSSs

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RSS RHESUS-RRQSNX

SpeciesRHESUS
TypeV-RS · complete signal, 3' of V (39 nt)
Sources MUSA
AACAATG HEPTAMER 7 nt AGGGGACTTCATTGTGAGCATAG spacer · 23 nt ACACAAACC NONAMER 9 nt
Heptamer Spacer (23 nt) Nonamer

RSS spacer length determines pairing under the 12/23 rule, so it follows the locus rather than the segment: a 12 nt RSS recombines with a 23 nt RSS.

39 nt
AACAATGAGGGGACTTCATTGTGAGCATAGACACAAACC

Find similar RSS

Alleles with this RSS variant

12 coding allele(s) linked to this exact RSS. The Source column shows which source recorded each allele–RSS pairing. Source coverage of allele to RSS pairings is source-specific.

Allele nameSpeciesLocus Source of this allele–RSS linkServer UID
IGHV11-3ZCZ*01_i0cac_g3t_g4c_6atgtt10_12ctca15_g18-_t19-_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_t58c_g70a_t81a_g82t_g83t_t85c_i90ata_g92c_a106g_g107c_a109t_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_a147g_t149a_t159c_g160a_a162g_c163t_t165c_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_g226c_g228-_c230a_a231t_t236a_a239c_244----------253_t256a_c257a_g259a_c263t_c265t_g267a_a268c_g275a_283tttagt288_c290a_g291a_g292t_c296t_c297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VSAWE4KH7
IGHV11-3ZCZ*01_i0cacca_a2c_g3t_g4a_c7t_a8t_g9t_g12-_16----a20_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_c47t_g49c_g57c_c61t_g70a_t81a_g82t_g83t_t85c_i90ata_g92c_a106g_g107c_a109t_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_130----133_c137t_g140a_g141a_a142g_g144t_a147g_t149a_t159c_g160a_a162g_c163t_t165c_c168g_t169g_c170g_g172t_i174g_g176a_t177g_c191a_g193a_c194t_203actt206_g226c_g228-_c230a_a231t_c233t_t236a_c238t_a239c_244----------253_t256a_c257a_g259t_c263t_c265t_g267a_a268c_283tttagt288_c290a_g291a_g292t_c296t_c297a_g298a_c300g_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VKCH4AGF3
IGHV4-3H7B*08_i0cacca_a2c_g3t_g4a_c7t_a8t_g9t_g12-_16----t20_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_g42a_c43t_t45c_g49c_g57c_c61t_g70a_t81a_a83t_t85c_i90ata_g92c_g107c_a110c_t111c_g112t_g116a_g119a_c120t_g122a_g123t_c127t_c130t_a131t_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_a164g_t165c_168---g171_a175t_a184g_g185a_t186a_c195a_t196a_c198t_207actt210_g216c_224-------------------t243_c245t_c248t_c255a_c256a_g258a_c261t_c263t_c265t_a268c_283tttagt288_c290a_g291a_g292t_c296t_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VUXDWYCZY
IGHV4-5TXH*02_3acaa6_8tatgtttctcag19_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_c47t_g49c_g57c_g70a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_t108c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a_g319a_321a321 RHESUS IGH MUSA RHESUS-VDUQ6SSHE
IGHV4-5TXH*02_3acaa6_8tatgtttctcag19_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_c47t_g49c_g57c_g70a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_t108c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a_g319a_321aa322 RHESUS IGH MUSA RHESUS-VKXCKG2AP
IGHV4-5TXH*02_3acaa6_8tatgtttctcag19_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_g70a_g79a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144c_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VK626AWHT
IGHV4-5TXH*02_3acaa6_8tatgtttctcag19_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_g70a_g79a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VWLB6HFND
IGHV4-5TXH*02_i0c_c1a_3caact7_g9t_c10g_12ttctc16_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_c47t_g49c_g57c_g70a_g79a_g80a_t81a_a83t_t85c_i90act_g101c_g107c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a184g_g185a_t186a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-V4N2FBS5C
IGHV4-6KBL*01_i0cac_g3c_6atgtt10_12ctca15_g18-_t19-_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_t58c_g70a_t81a_i82tcccca_g83t_t85a_t89c_c105t_g107c_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_c130t_a131t_c137t_g140a_g141a_a142g_g144t_g146a_t149a_t159c_g160a_c163t_t165c_c168g_a170g_a172t_a175g_g176a_t177a_c195a_g196a_c198t_207actt210_223-------229_t234a_a237t_g239t_241------246_c248t_c255a_c256a_g258a_c261t_c263t_c265t_g267a_a268c_g275a_283tttagt288_c290a_g291a_g292t_c296t_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VSCOSWMUE
IGHV4-6KBL*01_i0cac_g3c_6atgtt10_12ctca15_g18-_t19-_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_t58c_g70a_t81a_i82tcccca_g83t_t85a_t89c_c105t_g107c_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_c130t_a131t_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_c163t_t165c_c168g_a170g_a172t_a175g_g176a_t177a_c195a_g196a_c198t_207actt210_223-------229_t234a_a237t_g239t_241------246_c248t_c255a_c256a_g258a_c261t_c263t_c265t_g267a_a268c_g275a_283tttagt288_c290a_g291a_g292t_c296t_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VMP7KWEPO
IGHV4-7BJU*05_i0c_c1a_3caact7_g9t_c10g_12ttctc16_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_g70a_t81a_g82t_g83t_t85c_g92c_c93t_g101c_t102c_g103a_t106g_a107c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a175g_g176a_t177a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a RHESUS IGH MUSA RHESUS-VPSF236ZG
IGHV4-HJCG*01_i0c_c1a_a2c_g3c_g4a_g6c_c7t_g9t_c10g_12ttct15_t19a_g21c_g22a_g23c_g25t_a26t_a27t_a33-_t38a_a41c_g42a_c43t_t45c_c47t_g49c_g57c_t58c_g70a_a77c_t81a_g82t_g83t_t85c_t87c_g88a_i89cataac_c105t_g107c_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_c130t_a131t_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_c163t_t165c_c168g_c169g_a172t_g176a_t177a_c195a_c198t_207actt210_223-------229_t234a_a237c_241------246_c255a_c256a_g258a_t259a_c261t_c263t_c265t_g267a_a268c_g275a_283tttagt288_c290a_g291a_g292t_c296t_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a_c319g RHESUS IGH MUSA RHESUS-V4PHRK54T