RHESUS-VPSF236ZG
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-7BJU*05_i0c_c1a_3caact7_g9t_c10g_12ttctc16_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_g70a_t81a_g82t_g83t_t85c_g92c_c93t_g101c_t102c_g103a_t106g_a107c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a175g_g176a_t177a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a: a Macaca mulatta IGH V allele sequence, 280 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 280 nt |
| Protein UID i | RHESUS-VP-XJF4SH (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VPSF236ZG). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-7BJU*05_i0c_c1a_3caact7_g9t_c10g_12ttctc16_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_g70a_t81a_g82t_g83t_t85c_g92c_c93t_g101c_t102c_g103a_t106g_a107c_a110c_a113g_g116a_c120-_g123t_c127t_c130t_a131t_g132a_c137t_a138t_g140a_g141a_a142g_g144t_t149a_a157g_t159c_g160a_a164g_c168g_a169g_c170g_a173g_a175g_g176a_t177a_c195a_g197a_c198t_g207a_c209t_c210t_223-------229_t234a_237------242_a244c_c245t_g246a_c255a_c256a_258----261_c263t_c265t_g267a_a268c_t277g_g280-_a283t_285tagt288_c290a_g291a_g292t_297aatta301_t304c_a308t_c309t_g311a_t312a_g315a_g317a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AACAATGAGGGGACTTCATTGTGAGCATAGACACAAACC | MUSA | RHESUS-RRQSNX |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGTATTGCCCTTCTCATGAGAAATTGCTCGATCTAAACCAAAACCCAGAACCTGTTAACAT | 46 + 17 nt | MUSA | RHESUS-LG6RVX |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VPSF236ZG/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases