RHESUS-VSCOSWMUE
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-6KBL*01_i0cac_g3c_6atgtt10_12ctca15_g18-_t19-_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_t58c_g70a_t81a_i82tcccca_g83t_t85a_t89c_c105t_g107c_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_c130t_a131t_c137t_g140a_g141a_a142g_g144t_g146a_t149a_t159c_g160a_c163t_t165c_c168g_a170g_a172t_a175g_g176a_t177a_c195a_g196a_c198t_207actt210_223-------229_t234a_a237t_g239t_241------246_c248t_c255a_c256a_g258a_c261t_c263t_c265t_g267a_a268c_g275a_283tttagt288_c290a_g291a_g292t_c296t_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a: a Macaca mulatta IGH V allele sequence, 286 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 286 nt |
| Protein UID i | RHESUS-VP-BQSDM4 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VSCOSWMUE). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-6KBL*01_i0cac_g3c_6atgtt10_12ctca15_g18-_t19-_c20-_g22c_g23a_c25t_c26t_a27t_g31t_a33g_g36t_t38a_a41c_c43t_t45c_g49c_g57c_t58c_g70a_t81a_i82tcccca_g83t_t85a_t89c_c105t_g107c_a110c_g114c_g116a_g119a_c120t_g122a_g123t_c127t_c130t_a131t_c137t_g140a_g141a_a142g_g144t_g146a_t149a_t159c_g160a_c163t_t165c_c168g_a170g_a172t_a175g_g176a_t177a_c195a_g196a_c198t_207actt210_223-------229_t234a_a237t_g239t_241------246_c248t_c255a_c256a_g258a_c261t_c263t_c265t_g267a_a268c_g275a_283tttagt288_c290a_g291a_g292t_c296t_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315a_g317a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AACAATGAGGGGACTTCATTGTGAGCATAGACACAAACC | MUSA | RHESUS-RRQSNX |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGCATTGCCCTTCTTATAAGAAATTGTTCAATCTAAACTGAAACCCAGAACCTGTTGACAT | 46 + 17 nt | MUSA | RHESUS-LZJPJC |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VSCOSWMUE/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases