RHESUS-VMH3JJCIK
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-KG56*01_i0t_c1g_a2t_g4t_g6t_9-------tg17_21atttatt27_a33c_a41g_t45c_g48a_g49c_a50t_c55g_t56c_g57c_c69t_t81a_a83t_i89cacagc_g107c_a110c_a113g_c127t_g133t_c136t_g140t_g141c_145-----149_t159c_g160a_t163g_a164g_c168-_c170g_t171g_a173c_t174a_a175c_t177a_c195a_g197a_c198t_a200c_c201t_g207c_t208c_c209t_a215c_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_a253t_c255t_a257g_g258a_t259a_c261t_c263t_c265t_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_a293c_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g: a Macaca mulatta IGH V allele sequence, 283 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 283 nt |
| Protein UID i | RHESUS-VP-JJAIOX (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VMH3JJCIK). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-KG56*01_i0t_c1g_a2t_g4t_g6t_9-------tg17_21atttatt27_a33c_a41g_t45c_g48a_g49c_a50t_c55g_t56c_g57c_c69t_t81a_a83t_i89cacagc_g107c_a110c_a113g_c127t_g133t_c136t_g140t_g141c_145-----149_t159c_g160a_t163g_a164g_c168-_c170g_t171g_a173c_t174a_a175c_t177a_c195a_g197a_c198t_a200c_c201t_g207c_t208c_c209t_a215c_t222c_c223t_g224c_t234c_a237c_g241t_a242c_c245t_a253t_c255t_a257g_g258a_t259a_c261t_c263t_c265t_a268c_c276t_t281c_c285-_g286-_c288a_g289a_g291t_a293c_g297a_g298a_c299a_g301t_a308c_c309t_g313-_c314-_a320g | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | TACAGAGAAGACGTCAGTGTGATCCCAGACACAAACTTC | MUSA | RHESUS-RJEJEB |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTATTTCATGTTTTGGCTTCTGTCCATGTTCAGAGATGTAGAGTCCGTGCACACCAACCAC | 46 + 17 nt | MUSA | RHESUS-LURQX2 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VMH3JJCIK/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases