RHESUS-VMQ37INUD

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalFalse Length280 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	False
Length	280 nt
Protein UID i	RHESUS-VP-SUUR4C (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VMQ37INUD). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1-2BLY*07_c7a_t11c_g24a_g34a_g49t_c69g_g79a_c90t_t105c_g106a_a107g_t112a_a113t_g133a_c134a_c137t_t158c_163ttttagttat172_a174t_a175g_a177g_c185g_t186a_g187t_g190t_g191t_c194t_a196t_198----a202_c205t_a206t_g207t_a209t_g210t_t211c_c213g_c214t_g216a_g221c_c222a_g224a_a225t_g226t_230-----ggg237_g239t_a242t_a244g_c245a_c248g_g249a_c251t_g252c_254aatt257_259agaa262_c264t_a265c_g268a_a269t_g270a_t272a_g275a_a277t_g278t_g282c_a283t_t286a_c287t_291-------t298_c300t_g301t_306aaca309_311caatctct318	VDJbase	MUSA

Contributed by MUSA. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	ATCAATGTTGTAAATATTTTGGAACCCAAACACAAGTT	MUSA	RHESUS-RSM7C7

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGTGGTTCTATTGAAGATCTGGATGATCAGGAAGCCAGGCAGGTGTGCCCACTCC	46 + 11 nt	MUSA	RHESUS-LKDS7S
ATGGACCGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGGTACAGGTGTGCCCACTCC	48 + 11 nt	MUSA	RHESUS-LKVHDR
ATGAGAAGGGGATTGAGTTCAGTCCAGTGGGCTCTCATCCATTCCTGTGCCCACTCC	46 + 11 nt	MUSA	RHESUS-LUX5MO

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VMQ37INUD/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

280 nt

CAGGTGAAGCCGGTGCAGTCTGGAGCTGAGATGAAGAAGCCTGGGTCCTCAGTGAAGGTCTCCTGGAAGGCTTCCAGATACACCTTTACCAGCTACATTATGCACTGGGTGCGACAGAACCTTGGACAAGGGCTTGAGTGGACGGGATTTTAGTTATCTGAGAGATGTTTCATATAACATTTATTCTGTAAGCAAATTTCAGGGATAGTCGAATGAATCAAATTAAGAAATCTGATACAGAACTTCCTCTGAATTGATCTTTGTAAACATCAATCTCTGA

Amino-acid sequence (V-REGION)

93 aa

QVKPVQSGAEMKKPGSSVKVSWKASRYTFTSYIMHWVRQNLGQGLEWTGF*LSERCFI*HLFCKQISGIVE*IKLRNLIQNFL*IDLCKHQSL

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases