RHESUS-VMXPEPIY2
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV9-46UO*06_i0g_g1a_a2g_t5g_c10g_13tccct17_t19a_c20a_g22c_g23t_c26-_t34c_t38g_49------------60_t62a_t64g_c66t_t67g_t69g_c71g_74ggggca79_a81g_t83g_c84t_a85c_t89g_c90a_104------t110_t116-_a118g_g119c_t121g_t125c_c127a_a131t_c134-_t135-_g139t_a142t_a143g_c148a_t149g_a150g_a152g_g153t_g157a_t159a_g160t_g164c_t165g_t167-_t168-_a170t_a171c_a172t_a176g_g178c_a182-_c183-_t186c_g187c_190---c193_a195t_a197g_t198c_t199c_c204t_206gggga210_t212g_a214g_a215g_a216c_c222g_a223t_a225t_t226c_t227c_a229c_c230g_c231a_c236g_a237g_240gccg243_a245g_t246g_t247c_i249gc_a250c_a251t_a253g_a254c_c257t_a258g_262ggtgg266_a270g_a271c_t272g_274ctgcag279_a283c_285ggtg288_g292a_294tcgt297_300aagc303_a308t_c312g_c314-_c315a_320cct322: a Macaca mulatta IGH V allele sequence, 277 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 277 nt |
| Protein UID i | RHESUS-VP-BFN6XU (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VMXPEPIY2). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV9-46UO*06_i0g_g1a_a2g_t5g_c10g_13tccct17_t19a_c20a_g22c_g23t_c26-_t34c_t38g_49------------60_t62a_t64g_c66t_t67g_t69g_c71g_74ggggca79_a81g_t83g_c84t_a85c_t89g_c90a_104------t110_t116-_a118g_g119c_t121g_t125c_c127a_a131t_c134-_t135-_g139t_a142t_a143g_c148a_t149g_a150g_a152g_g153t_g157a_t159a_g160t_g164c_t165g_t167-_t168-_a170t_a171c_a172t_a176g_g178c_a182-_c183-_t186c_g187c_190---c193_a195t_a197g_t198c_t199c_c204t_206gggga210_t212g_a214g_a215g_a216c_c222g_a223t_a225t_t226c_t227c_a229c_c230g_c231a_c236g_a237g_240gccg243_a245g_t246g_t247c_i249gc_a250c_a251t_a253g_a254c_c257t_a258g_262ggtgg266_a270g_a271c_t272g_274ctgcag279_a283c_285ggtg288_g292a_294tcgt297_300aagc303_a308t_c312g_c314-_c315a_320cct322 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CAGAGGGCAAGAAACATGTTTTTGGTGTGGAACAAACA | MUSA | RHESUS-RP4DZI |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTCCCTGGCCCTGCTGAGCCTCGGTGTTCTCTCTGCACAGTGGGGCCGGGCCATGCTAGGG | 46 + 17 nt | MUSA | RHESUS-LKF2CX |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VMXPEPIY2/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases