RHESUS-VPE3YZ2IC
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-N72G*01_g3c_g4t_g6c_c7g_g9c_c10g_t11a_a15t_a17g_g18a_t21g_23ttctt27_g31t_c33a_t34c_t35g_g37a_39agtat43_t45c_g46c_49aaact53_57ctccactc64_t69c_c71t_a73t_t76c_c77g_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_a138-_a142g_a163g_c172a_a174t_g182c_g191a_c194g_a197g_g216c_c223t_a245g_c281t_g289a_a297g_300------------ca313_a316t: a Macaca mulatta IGH V allele sequence, 286 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 286 nt |
| Protein UID i | RHESUS-VP-O4VFAJ (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VPE3YZ2IC). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-N72G*01_g3c_g4t_g6c_c7g_g9c_c10g_t11a_a15t_a17g_g18a_t21g_23ttctt27_g31t_c33a_t34c_t35g_g37a_39agtat43_t45c_g46c_49aaact53_57ctccactc64_t69c_c71t_a73t_t76c_c77g_t78g_a81t_t82c_a85t_c87a_t88g_c90g_104caagtg109_a115g_t116g_g118a_a119g_c127t_a138-_a142g_a163g_c172a_a174t_g182c_g191a_c194g_a197g_g216c_c223t_a245g_c281t_g289a_a297g_300------------ca313_a316t | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | GACAGTGAGGGGAAGTCAGTGTGAGCCCGGACACAAACC | MUSA | RHESUS-RW3XLA |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGGATCCAGGCAGGAAAACAGCTTCCTTTACAAAGTGGTTGGGCAGCCCTCCTTCCATGGG | 46 + 17 nt | MUSA | RHESUS-LK4CBR |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VPE3YZ2IC/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases