RHESUS-VQKA2HSPO
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-5TXH*02_i0ct_3acaca7_9taaaa13_g15t_i19g_21cacattt27_g31t_a33t_c34t_g36a_g42t_44agcaa48_51ataa54_t56a_g57t_c59t_61ggtttaaat69_t74g_c75a_77---tcct83_t85c_c86t_t89c_c90a_g101c_g107c_a110c_a113g_g119t_c127a_g128a_c129t_g139c_t149a_a157g_t159c_g160a_a164g_167cagg170_t172c_a184g_g185a_t186a_g189a_c195a_g197a_c198t_a200c_t208c_c209t_a220t_g224t_c228t_t233c_t234c_a237c_g241t_a242c_c243t_c245t_g252-_c255a_c263t_g267a_a268t_a269g_c278a_t281g_c284g_g286a_c287g_g289a_c290a_g292c_a295c_297------------------------320: a Macaca mulatta IGH V allele sequence, 271 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 271 nt |
| Protein UID i | RHESUS-VP-F7A6GS (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VQKA2HSPO). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-5TXH*02_i0ct_3acaca7_9taaaa13_g15t_i19g_21cacattt27_g31t_a33t_c34t_g36a_g42t_44agcaa48_51ataa54_t56a_g57t_c59t_61ggtttaaat69_t74g_c75a_77---tcct83_t85c_c86t_t89c_c90a_g101c_g107c_a110c_a113g_g119t_c127a_g128a_c129t_g139c_t149a_a157g_t159c_g160a_a164g_167cagg170_t172c_a184g_g185a_t186a_g189a_c195a_g197a_c198t_a200c_t208c_c209t_a220t_g224t_c228t_t233c_t234c_a237c_g241t_a242c_c243t_c245t_g252-_c255a_c263t_g267a_a268t_a269g_c278a_t281g_c284g_g286a_c287g_g289a_c290a_g292c_a295c_297------------------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | AACCATGTTTTTGTTTGTTTGTTTGTTGTTTTCAACAGTC | MUSA | RHESUS-RBXUJF |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAAGACGCTGTGGTGTGTCCGTGTGTCTGTAACCCACGGGAATGTTCTATGTTATGTGTAT | 46 + 17 nt | MUSA | RHESUS-LV52LF |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VQKA2HSPO/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases