RHESUS-VRXUDWP7M
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-6KBL*04_i0aaca_c1a_a2c_g3t_c7t_a8t_g9t_g12-_g15t_18----ca23_c25t_c26t_a27c_g31t_a33g_g36t_t38a_a41c_g42a_c43a_t45g_c47g_g48a_g57c_c65t_c66g_g70a_c71t_t81a_g83t_t85c_t87c_a88g_g104t_c105a_g107c_t108c_c111-_a113g_116tcct119_g122a_i124at_126gtat129_a131t_g133c_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_c163t_165cgag168_a170g_a172t_a175g_g176a_t177a_g191t_c195a_t196a_c198t_207actt210_g224c_226-------------238_g241t_a242c_g246a_c255a_c263-_c264-_c265-_g267a_a268c_c276-_t277-_a283t_c287g_c288t_c290a_g291a_g292c_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315-_g317a: a Macaca mulatta IGH V allele sequence, 274 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 274 nt |
| Protein UID i | RHESUS-VP-BY4ZQY (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VRXUDWP7M). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-6KBL*04_i0aaca_c1a_a2c_g3t_c7t_a8t_g9t_g12-_g15t_18----ca23_c25t_c26t_a27c_g31t_a33g_g36t_t38a_a41c_g42a_c43a_t45g_c47g_g48a_g57c_c65t_c66g_g70a_c71t_t81a_g83t_t85c_t87c_a88g_g104t_c105a_g107c_t108c_c111-_a113g_116tcct119_g122a_i124at_126gtat129_a131t_g133c_c137t_g140a_g141a_a142g_g144t_t149a_t159c_g160a_c163t_165cgag168_a170g_a172t_a175g_g176a_t177a_g191t_c195a_t196a_c198t_207actt210_g224c_226-------------238_g241t_a242c_g246a_c255a_c263-_c264-_c265-_g267a_a268c_c276-_t277-_a283t_c287g_c288t_c290a_g291a_g292c_g297a_g298a_c300t_g301a_t304c_a308t_c309t_g311a_t312a_g315-_g317a | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAATGAGGGGACTTTATTGTGAGCCTGGACACAAACC | MUSA | RHESUS-RJIZWM |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGTTCATTTTTCTAACAGCAGTTTATCTTTTTTATTTGGTTGCAACAGAACCCGTTAACATC | 46 + 17 nt | MUSA | RHESUS-LDPFGW |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VRXUDWP7M/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases