RHESUS-VSMIDCKCC

AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.

SpeciesMacaca mulatta LocusIGH TypeV FunctionalFalse Length280 nt

Species	Macaca mulatta (NCBITAXON:9544)
Locus / type	IGH / V
Functional i	False
Length	280 nt
Protein UID i	RHESUS-VP-AVXYN2 (shared by alleles with the same V-REGION amino-acid sequence)

Allele names i

Every name below denotes this exact sequence (RHESUS-VSMIDCKCC). None is canonical; they are labels, and the UID is the key.

Name	Scheme	Source(s)
IGHV1-2BLY*07_c7a_t11a_g49t_c69g_g79a_c90t_t105c_g106a_a107g_t112a_a113t_g133a_c134a_c135t_c137t_163-----------tttt177_c185g_g187t_g188a_g190t_g191t_c192g_c194g_a196g_c198t_a200t_g202t_205---------213_g221a_224tttatt229_c231t_a232g_c236g_238----241_c243a_c245t_a246t_g249a_a250g_c251g_254ttgt257_c260a_c261a_a263g_c264a_t266c_g267c_g268a_g270a_c271t_g273a_c276a_g278a_c279t_284----287_g289a_a290c_g291a_294acttc298_c300t_g301c_t304a_t307c_c309a_g311c_g313t_c314t_a316t_g317a_319acatcaatttctga332	VDJbase	MUSA

Contributed by MUSA. See Sources & citations for each source's version, citation and licence.

RSS i

Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.

Part	Sequence	Source	RSS UID
v_rs	ATCAATGTTGTAAATATTTTGGAACCCAAACACAAGTT	MUSA	RHESUS-RSM7C7

Leader

Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.

Leader (exon 1 + exon 2)	Split	Source	Leader UID
ATGGACCGGACCTGGAGGATCCTCTTCTTGGTGGCAGCAGCTACAGGTTTCCTGTATCCTCCCCA	48 + 17 nt	MUSA	RHESUS-LEB4PI

Find similar alleles

Ranks coding alleles by normalized edit-distance identity. Also available at /api/sequences/RHESUS-VSMIDCKCC/similar?min_identity=0.95&kind=nt.

Coding sequence (nt)

280 nt

CAGGTGAAGCAGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCAGTGAAGGTCTCCTGGAAGGCTTCCAGATACACCTTTACCAGCTACATTATGCACTGGGTGCGACAGAATCTTGGACAAGGGCTTGAGTGGATGGGATTTTAGTTATTTGAGAGATTTTTCACAGGACATTTATTCTGTGAGCAAATTTCAGGGATTGTAGAATGAACCAAATTAAGAAATCTGATACAGAACTTCCTCTGAATCAATCTTTGTAAACATCAATTTCTGA

Amino-acid sequence (V-REGION)

93 aa

QVKQVQSGAEVKKPGSSVKVSWKASRYTFTSYIMHWVRQNLGQGLEWMGF*LFERFFTGHLFCEQISGIVE*TKLRNLIQNFL*INLCKHQFL

Translated here from the nucleotide sequence; no source published a protein for this allele. i

API: JSON · AIRR AlleleDescription · aliases