RHESUS-VTCCK572O
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV4-53JX*01_i0t_c1g_a2t_g4t_g6t_8-------tc16_g18t_20gccct24_c26t_a27t_a33g_g36t_t45c_g48a_g49c_g57c_c65t_t72c_80catt83_i89cacaac_c105t_g107c_t109c_a110t_a113g_g119t_g128a_c129t_c136g_g145a_g146a_t149c_g153c_t159c_g160a_a163t_a164g_t165c_t167c_t168a_a170c_g172c_g173a_a175g_t177g_a184g_t185g_t186a_c188t_g190c_g191a_c194a_196ctaac200_a202c_c205t_c209-_c211a_t212a_c213g_a215g_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249a_g252a_t255a_c261t_c263t_g267a_a268c_c278a_t279c_g280c_c284a_g286a_c287a_c290a_g292t_296----299_g301a_g303t_t304a_t307a_i310a_g311c_t312a_g315c_g317t_a318t_321tttttataaaataaaa336: a Macaca mulatta IGH V allele sequence, 309 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 309 nt |
| Protein UID i | RHESUS-VP-HLVQA3 (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VTCCK572O). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV4-53JX*01_i0t_c1g_a2t_g4t_g6t_8-------tc16_g18t_20gccct24_c26t_a27t_a33g_g36t_t45c_g48a_g49c_g57c_c65t_t72c_80catt83_i89cacaac_c105t_g107c_t109c_a110t_a113g_g119t_g128a_c129t_c136g_g145a_g146a_t149c_g153c_t159c_g160a_a163t_a164g_t165c_t167c_t168a_a170c_g172c_g173a_a175g_t177g_a184g_t185g_t186a_c188t_g190c_g191a_c194a_196ctaac200_a202c_c205t_c209-_c211a_t212a_c213g_a215g_g224c_t227g_t234c_a237c_g241t_a242c_g246a_i247g_c249a_g252a_t255a_c261t_c263t_g267a_a268c_c278a_t279c_g280c_c284a_g286a_c287a_c290a_g292t_296----299_g301a_g303t_t304a_t307a_i310a_g311c_t312a_g315c_g317t_a318t_321tttttataaaataaaa336 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | CACAGTGAGGGGAAATCATTGTGAGTTCAGAAGCAAACT | MUSA | RHESUS-RUC232 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAGGTGTAGAAGTTGCATGTATATTGTGGATATTAACACTTTTTCTGTGCATGCCGACAAC | 46 + 17 nt | MUSA | RHESUS-LU6GB5 |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VTCCK572O/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases