TROUT-JFQFUP4YO
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHJ1*01, IGHJ1D*01, IGHJ3D*01: a Oncorhynchus mykiss IGH J allele sequence, 51 nt, functional. The nucleotide sequence is below, with every recorded name and its source.
Earlier records of this allele i
IMGT has published this allele name over more than one sequence extent. Earlier sequence extents are deferred from default search results but remain resolvable, so a paper that cited one still leads here.
| Record | Name | Length | Relation to this record | IMGT releases |
|---|---|---|---|---|
| TROUT-JKS5AXWN2 | IGHJ1*01 | 48 nt | bases differ | 2013-01-20–2019-03-01 |
| Species | Oncorhynchus mykiss (NCBITAXON:8022) |
|---|---|
| Locus / type | IGH / J |
| Functional i | True |
| Length | 51 nt |
Coding sequence (nt)
Name history i: formerly IGHJ3*01 (to 2019-03-01); re-cut from IGHJ1*01 (48 nt);
Allele names i
Every name below denotes this exact sequence (TROUT-JFQFUP4YO). None is canonical; they are labels, and the UID is the key.
Multiple allele designations. This one sequence is recorded under 3 different allele designations: IGHJ1*01, IGHJ1D*01, IGHJ3D*01. These are identical normalized nucleotide sequences with different attributed names.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHJ1*01 | IMGT | IMGT |
| IGHJ1D*01 | IMGT | IMGT |
| IGHJ3D*01 | IMGT | IMGT |
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHJ3*01 | 2019-03-01 |
External records i
IMGT: IGHJ1*01
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| j_rs | GTTTTTAGTTTAGGGGCAGATAAACAATTATCACTGTG | IMGT | TROUT-RJLSI2 |
| j_rs | GGTTTTTAGTTTAGGGGCAGATAAACAATTATCACTGTG | IMGT | TROUT-RZYICZ |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/TROUT-JFQFUP4YO/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases