TROUT-JKS5AXWN2
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
a Oncorhynchus mykiss IGH J allele sequence, 48 nt, not recorded, archived. The nucleotide sequence is below, with every recorded name and its source.
A newer source record exists for this allele designation. IGHJ1*01 is still published by IMGT as TROUT-JFQFUP4YO, 51 nt, whose bases differ from this one. This is the earlier record (48 nt, current in IMGT releases 2013-01-20–2019-03-01). The allele was not renamed and it was not withdrawn: IMGT changed the published sequence extent associated with this designation. Both extents are kept because a sequence is identified by its bases, so a change in extent is a different sequence.
| Species | Oncorhynchus mykiss (NCBITAXON:8022) |
|---|---|
| Locus / type | IGH / J |
| Functional i | None |
| Length | 48 nt |
Coding sequence (nt)
Name history i: first seen IMGT 2013-01-20; formerly IGHJ1*01 (to 2013-01-20); superseded by IGHJ1*01 (51 nt); archived — removed from the current IMGT reference, kept reachable;
Allele names i
None.
Former IMGT names i
| Former name | Last seen in IMGT release |
|---|---|
| IGHJ1*01 | 2013-01-20 |
Contributed by IMGT. See Sources & citations for each source's version, citation and licence.
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/TROUT-JKS5AXWN2/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases