RHESUS-V5UCCKHIJ
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV1-TCEU*02_c6g_c21t_a38g_g46-_a60g_c61g_c69t_g72t_g73t_c74t_t81g_a83t_c86t_t88a_t90c_c105a_t112a_a113g_a118c_t125c_a127c_t146g_g151a_t167a_t168c_t192c_c194g_g197t_g202a_a204g_c213t_c214a_g224c_g226c_c230a_c231t_c251a_t255c_a265g_t266c_c271t_307--------------320: a Macaca mulatta IGH V allele sequence, 281 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 281 nt |
| Protein UID i | RHESUS-VP-AH2JIW (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-V5UCCKHIJ). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV1-TCEU*02_c6g_c21t_a38g_g46-_a60g_c61g_c69t_g72t_g73t_c74t_t81g_a83t_c86t_t88a_t90c_c105a_t112a_a113g_a118c_t125c_a127c_t146g_g151a_t167a_t168c_t192c_c194g_g197t_g202a_a204g_c213t_c214a_g224c_g226c_c230a_c231t_c251a_t255c_a265g_t266c_c271t_307--------------320 | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | TACTGTGCACGACACACAGTGTGGAAACCCACAGCCT | MUSA | RHESUS-RTVQGF |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGAGGAGCGTGCTCTGAGGGGGCTTATTCTTCAGTGAAAGGACCTCTGCCCACTCC | 46 + 11 nt | MUSA | RHESUS-L6IIUU |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-V5UCCKHIJ/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases