RHESUS-VAXOPOBAW
AIRBabel's deterministic identifier, minted from the sequence (SPECIES-CODE+hash) i: a stable sequence-derived identifier, not an official allele name. This sequence's names from each source are listed under Allele names.
IGHV3-6HY2*01_a2g_5gaggct10_t14c_g15a_g16c_g18t_t19c_a27t_g31c_g32c_t35g_g36a_t38a_c40t_a41c_g42t_g46-_g48t_c55t_t56c_g57a_c75t_t83c_c111t_t112g_g114c_t118c_a119g_g122a_c126g_g132a_g147a_c148t_g153a_t158g_g164-_t165-_g170a_a172c_g173c_g175a_a176c_g186t_a187g_t189a_a190g_a196t_g197a_g202c_g216a_g243a_g247a_g273a_g284a_g289a_a291c_g303c_t310a_a317g: a Macaca mulatta IGH V allele sequence, 293 nt, non-functional. The nucleotide and amino-acid sequence is below, with every recorded name and its source.
| Species | Macaca mulatta (NCBITAXON:9544) |
|---|---|
| Locus / type | IGH / V |
| Functional i | False |
| Length | 293 nt |
| Protein UID i | RHESUS-VP-TRZVCE (shared by alleles with the same V-REGION amino-acid sequence) |
Coding sequence (nt)
Amino-acid sequence (V-REGION)
Translated here from the nucleotide sequence; no source published a protein for this allele. i
Name history i: stable — no former names, re-cuts, or archival on record.
Allele names i
Every name below denotes this exact sequence (RHESUS-VAXOPOBAW). None is canonical; they are labels, and the UID is the key.
| Name | Scheme | Source(s) |
|---|---|---|
| IGHV3-6HY2*01_a2g_5gaggct10_t14c_g15a_g16c_g18t_t19c_a27t_g31c_g32c_t35g_g36a_t38a_c40t_a41c_g42t_g46-_g48t_c55t_t56c_g57a_c75t_t83c_c111t_t112g_g114c_t118c_a119g_g122a_c126g_g132a_g147a_c148t_g153a_t158g_g164-_t165-_g170a_a172c_g173c_g175a_a176c_g186t_a187g_t189a_a190g_a196t_g197a_g202c_g216a_g243a_g247a_g273a_g284a_g289a_a291c_g303c_t310a_a317g | VDJbase | MUSA |
Contributed by MUSA. See Sources & citations for each source's version, citation and licence.
RSS i
Recombination signal sequences flanking this allele. Click one to see every coding allele linked to that exact RSS variant.
| Part | Sequence | Source | RSS UID |
|---|---|---|---|
| v_rs | TCCAATGAGGAAAAGTCAGTGTGAGCCCAGACACAAACC | MUSA | RHESUS-RYJF47 |
Leader
Signal-peptide coding sequence (spliced exon 1 + exon 2). The genomic intron between the two exons is deferred.
| Leader (exon 1 + exon 2) | Split | Source | Leader UID |
|---|---|---|---|
| ATGGAGTTGGGGCTGCACTGGGTTTCGTCGTTCTAAAAGGTGACTCTGCAGCTGGTGTAGTCT | 46 + 17 nt | MUSA | RHESUS-LSG6BP |
Find similar (nt · aa · cross-species) i
Everything comparative about this sequence (the exact differences to other alleles, protein consequence, IMGT alignment, cross-species nearest) is shown per hit in the results of this query.
Ranks coding alleles by normalized edit-distance identity.
Also available at /api/sequences/RHESUS-VAXOPOBAW/similar?min_identity=0.95&kind=nt.
API: JSON · AIRR AlleleDescription · aliases